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Table 5 Classification of genes with > 50 kb contigs that were present in at least ten annotation categories

From: A computational approach to candidate gene prioritization for X-linked mental retardation using annotation-based binary filtering and motif-based linear discriminatory analysis

No of annotation terms matched (/40 HGNC symbol XLMR gene1 50 kb2 100 kb2 Dist (kb)3 Strata
24 DMD 1 NX NX 71.7 XAR
23 GPM6B 0 NX NX 68 XAR
19 AP1S2 1 X X 61.4 XAR
19 FGF13 0 NX NX 157.8 XCR
19 ZDHHC9 1 X NX 60.7 XCR
18 TAF9B 0 NX NX 133 XCR
18 FAM156A 0 X NX 90.8 XCR
18 FAM156B 0 X NX 90.8 XCR
17 ARHGEF9 1 NX X 259.5 XCR
17 TMEM47 0 NX NX 285.5 XAR
16 NAP1L2 0 NX NX 182.7 XCR
16 NSBP1 0 NX NX 80.3 XCR
16 PCSK1N 0 NX NX 56.7 XCR
16 UXT 0 X NX 64.4 XCR
15 BCOR 1 X X 253.8 XAR
15 ENOX2 0 NX NX 155 XCR
15 HUWE1 1 X NX 224.7 XCR
15 LAS1L 0 NX NX 132.8 XCR
15 THOC2 0 NX NX 124 XCR
14 CXorf61 0 NX NX 323.4 XCR
14 TBL1X 0 X NX 190.3 XAR
14 TMLHE 0 NX NX 154.8 XCR
13 C1GALT1C1 0 NX NX 102.9 XCR
13 KAL1 0 NX NX 58.6 XAR
13 PPP2R3B 0 NX NX 237.4 XAR
13 RNF12 0 NX NX 65.4 XCR
13 ZMAT1 0 NX NX 77 XCR
12 GABRE 0 NX NX 103 XCR
12 ZC4H2 0 X NX 431.8 XCR
12 MAGED4 0 NX X 115.6 XCR
12 MAGED4B 0 NX X 115.6 XCR
12 MORC4 0 NX NX 64.2 XCR
12 RAI2 0 NX NX 302.1 XAR
11 APLN 0 X NX 84.5 XCR
11 KLHL13 0 NX NX 83.1 XCR
11 MUM1L1 0 NX NX 93.4 XCR
11 RAP2C 0 X NX 160.1 XCR
11 SLITRK4 0 NX NX 72.2 XCR
11 SYTL4 0 NX NX 88.2 XCR
10 CHRDL1 0 NX NX 300.5 XCR
10 PHF16 0 NX NX 72.4 XAR
10 STAG2 0 NX NX 60.9 XCR
  1. 1Indicates if gene is a known XLMR (= 1) or not (= 0)
  2. 2X indicates that a gene was classified as an XLMR gene and NX signifies classificiation as a non-XLMR gene.
  3. 3Distance from the TSS of gene to its closest neighbor gene