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Table 3 Comparison of gene transcription level ratios MT/WT obtained in the model and sig3 and sig4 gene knockout experiments for Locus 3 in Arabidopsis

From: Modeling RNA polymerase competition: the effect of σ-subunit knockout and heat shock on gene transcription level

Gene sig3-knockout Model (sig3) sig4-knockout Model (sig4)
psbB 1.02 ± 0.36 1.27 ± 0.12 0.69 ± 0.19 0.84 ± 0.11
psbT 0.98 ± 0.25 1.30 ± 0.12 0.96 ± 0.15 0.85 ± 0.11
psbN 0.49 ± 0.46 0.41 ± 0.12 1.03 ± 0.02 1.02 ± 0.19
psbH 1.31 ± 0.05 1.28 ± 0.12 1.01 ± 0.08 0.83 ± 0.11
petB 0.91 ± 0.15 1.09 ± 0.11 0.87 ± 0.29 0.83 ± 0.11
petD 0.92 ± 0.09 0.89 ± 0.10 0.81 ± 0.21 0.81 ± 0.11
rpoA 0.94 ± 0.14 0.82 ± 0.20 0.79 ± 0.11 1.01 ± 0.14
rps11 0.92 ± 0.33 0.90 ± 0.21 0.98 ± 0.31 1.01 ± 0.13
rpl36 0.88 ± 0.11 1.03 ± 0.21 1.54 ± 0.62 1.08 ± 0.18
rps8 1.11 ± 0.04 1.03 ± 0.21 0.83 ± 0.15 1.08 ± 0.18
rpl14 1.04 ± 0.15 1.03 ± 0.21 1.11 ± 0.02 1.08 ± 0.18
rpl16 1.09 ± 0.03 1.03 ± 0.21 1.18 ± 0.03 1.08 ± 0.18
rps3 1.24 ± 0.26 1.03 ± 0.21 1.25 ± 0.02 1.08 ± 0.18
rpl22 1.09 ± 0.13 1.03 ± 0.21 1.20 ± 0.12 1.08 ± 0.18
rps19 1.15 ± 0.50 1.03 ± 0.21 0.96 ± 0.07 1.08 ± 0.17
rpl2 0.94 ± 0.15 1.03 ± 0.21 0.95 ± 0.06 1.08 ± 0.17
rpl23 1.05 ± 0.04 1.06 ± 0.20 1.35 ± 0.33 1.10 ± 0.17
  1. Termination probabilities are T1 = 0.25 and T2 = 0.25; binding intensities are P1 = 0.555/0.867/1.355, P2 = 0.075/0.227/0.284, P3 = 0.116/0.146/0.182 (sig3, sig4 mutants and the wild type, correspondingly), N = 0.116, ref. to the Results. Other designations as in Table 2.