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Table 2 Comparison of gene transcription level ratios obtained in the model and experiment for Locus 1 (Arabidopsis) and Locus 2 (Hordeum)

From: Modeling RNA polymerase competition: the effect of σ-subunit knockout and heat shock on gene transcription level

Gene Experiment Model
Locus 1 (Arabidopsis) sig4 knockout, MT/WT  
ycf1 0.73 ± 0.04 0.76 ± 0.01
ndhF 0.43 ± 0.10 0.47 ± 0.19
rpl32 1.52 ± 0.06 1.55 ± 0.02
Locus 2 (Hordeum) Heat shock, HT/WT  
rpl23-rpl2 2.15/2.69 2.64 ± 0.02
psbA 0.53/0.55 0.54 ± 0.04
  1. Standard deviations are provided where applicable. Values separated by a slash in the second column for Locus 2 are the results of two independent heat shock studies. The following binding intensities were used: N1 = 0.003, N2 = 0.054, P1 = 0.010/0.037, P2 = 0.050/0.093 (Locus 1) and P0 = 0.2, P1 = 0.9, P2 = 0.3, P3 = 0.1 (Locus 2), ref. to the Results. Other model parameters were fixed at the values shown in Table 1.