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Table 2 Comparison of gene transcription level ratios obtained in the model and experiment for Locus 1 (Arabidopsis) and Locus 2 (Hordeum)

From: Modeling RNA polymerase competition: the effect of σ-subunit knockout and heat shock on gene transcription level

Gene

Experiment

Model

Locus 1 (Arabidopsis)

sig4 knockout, MT/WT

 

ycf1

0.73 ± 0.04

0.76 ± 0.01

ndhF

0.43 ± 0.10

0.47 ± 0.19

rpl32

1.52 ± 0.06

1.55 ± 0.02

Locus 2 (Hordeum)

Heat shock, HT/WT

 

rpl23-rpl2

2.15/2.69

2.64 ± 0.02

psbA

0.53/0.55

0.54 ± 0.04

  1. Standard deviations are provided where applicable. Values separated by a slash in the second column for Locus 2 are the results of two independent heat shock studies. The following binding intensities were used: N1 = 0.003, N2 = 0.054, P1 = 0.010/0.037, P2 = 0.050/0.093 (Locus 1) and P0 = 0.2, P1 = 0.9, P2 = 0.3, P3 = 0.1 (Locus 2), ref. to the Results. Other model parameters were fixed at the values shown in Table 1.
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Biology Direct

ISSN: 1745-6150

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