Causal graph-based analysis of genome-wide association data in rheumatoid arthritis

Biology Direct

Table 1 SNPs identified by the TIE* method in NARAC training set.

dbSNP ID	Markov boundary	Chromosome*		Minor allele frequency in NARAC cases	Minor allele frequency in NARAC controls	Gene name
		Number	coordinate
*rs660895*	1,2	6	32,577,380	53%	19%	-
*rs6910071*	1,2	6	32,231,452	51%	20%	C6orf10
*rs9275390*	1	6	32,669,156	48%	25%	-
*rs3129871*	1,2	6	32,406,342	17%	37%	HLA-DRA
*rs9275374*	2	6	32,668,526	48%	25%	-
*rs12523624*	1,2	5	142,020,508	53%	48%	FGF1

These SNPs participate in the two Markov boundaries of the rheumatoid arthritis phenotypic response variable (denoting case and control status of the subjects).
* based on dbSNP and GRCh37 Homo sapiens Genome Build 37 version 1.

ISSN: 1745-6150