The evolutionary rate variation among genes of HOG-signaling pathway in yeast genomes

Biology Direct

Table 2 Summary statistics used in the multivariate analysis

Gene	Position	Protein length^a	d _N ^b	ω^b	PPI^c	Fop^c	Eavg^c
SLN1	1	1220	0.0156	0.0534	23	0.435	1784.290
YPD1	2	167	0.000014	0.0001	31	0.534	1017.443
SSK1	3	712	0.0208	0.0767	31	0.414	2416.731
SSK2	4	1579	0.00758	0.0316	29	0.445	2156.276
PBS2	5	668	0.00731	0.0276	45	0.456	1829.891
HOG1	6	435	0.00122	0.0057	82	0.487	3725.510
HOT1	7	719	0.0364	0.109	16	0.407	1135.488
GPD1	8	391	0.00115	0.0072	5	0.744	7653.448
SHO1	1	367	0.00702	0.0298	90	0.463	1998.004
MSB2	1	1306	0.0677	0.2496	20	0.457	5044.198
CDC24	2	854	0.0028	0.0093	78	0.442	2105.747
CDC42	2	191	0.0049	0.011	113	0.495	6086.679
STE20	3	939	0.0161	0.0748	141	0.463	1619.444
STE50	3	346	0.0155	0.1138	61	0.464	1441.888
STE11	4	717	0.0118	0.0425	105	0.443	1512.138
SKO1	7	647	0.0253	0.0676	19	0.408	2101.820
MSN4	7	630	0.0108	0.0467	10	0.462	1855.669
SFA1	8	386	0.00923	0.0303	11	0.553	3738.413
TPS1	8	495	0.000025	0.0001	60	0.549	7123.245

^a Number of amino acids in the S. cerevisiae protein.
^b The d_N and ω values in the S. cerevisiae lineages.
^c PPI: protein and protein interaction; Fop: Frequency of optimal codons; Eavg: Average gene expression levels.

ISSN: 1745-6150