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Figure 1 | Biology Direct

Figure 1

From: Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

Figure 1

Ty3/Gypsy and Ty1/Copia phylogenies. A) Inferred NJ tree of Ty3/Gypsy LTR retroelements based on pol. Bootstrap values over 55 are indicated. The tree can be divided into two major branches: one encompassing all chromoviral LTR retrotransposons (in red), the other (Branch 2, in black) encompassing the remaining lineages of LTR retrotransposons and retroviruses. B) Inferred NJ tree of Ty1/Copia LTR retroelements based on pol. This tree reveals two major branches, Branch 1 and Branch 2 (in red and black, respectively). For more information about the different sequences used, see the section "Sequences" under Methods.

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