Skip to main content

Table 2 Comparison between HMMs and MRC sequences

From: Bioinformatic flowchart and database to investigate the origins and diversity of Clan AA peptidases

COG3577 MRC sequence

DDI MRC sequence

SASPase MRC sequence

HMM profile

Score

E value

HMM profile

Score

E value

HMM profile

Score

E value

Osvaldo

16.7

2.3e-05

NIX1

30.3

3.5e-08

Osvaldo

14.7

3.7e-05

COG5550

-5.1

0.019

412/Mdg1

16.0

5.7e-05

Reina

-2.3

3.2e-04

Caulimoviridae

-11.9

0.04

Athila

8.0

1.4e-04

Chrofung

-4.8

9.4e-04

Alpharetroviridae

-19.6

0.048

Del

7.1

2.6e-04

TF

-3.3

0.0025

Del

-17.5

0.051

Micropia/Mdg3

-2.7

8.5e-04

Del

-3.6

0.0025

Galadriel

-26.3

0.21

COG3577

-11.8

9.0e-04

Mag

-3.9

0.0093

Mag

-17.1

0.22

SASPase

-1.3

0.0024

Micropia/Mdg3

-14.0

0.012

DDI

-67.8

0.71

Osvaldo

-4.4

0.0034

Errantiviridae

-1.3

0.015

Lentiviridae

-25.4

0.87

Reina

-13.2

0.004

412/Mdg1

-9.0

0.043

   

Chrofung

-11.5

0.0051

DDI

-57.8

0.076

  1. The comparison was performed using the MRCs as queries to the HMM search at GyDB with hmmpfam. We only summarize the most significant (top) hits of similarity.