Table 1 Virus-derived sequences in the the grapevine genome.
Virus family, genus, and species | Related gene | % a.a. identity | Accession code; chrom. number and position; Genoscope 40024 | Contig and position; IASMA 115 ENTAV |
|---|---|---|---|---|
Caulimoviridae, Tungovirus | ||||
Rice tungro bacilliform virus | hyp. prot. (RT-like) | 60% | GWSUNIT02805346001 chr1 random:120,261,152..120,261,368 (217 bp) | VV78X109220.8 (5,691..5,480) |
Rice tungro bacilliform virus | hyp. prot. (RT-like) | 41% | GWSUNIT02217113001 chr3:8,822,689..8,823,246 (558 pb) | VV78X056749.7 (50,560..50,003) |
Rice tungro bacilliform virus | hyp. prot. (RT-like) | 47% | GWSUNIT00527712001 chr3:9,805,215..9,805,809 (595 pb) | VV78X138621.5 (894..1,481) |
Rice tungro bacilliform virus | hyp. prot. (RT-like) | 47% | GWSUNIT03505403001 chr5:18,556,193..18,556,564 (372 pb) | VV78X212046.4 (3,752..4,123) |
Rice tungro bacilliform virus | hyp. prot. (RT-like) | 41% | GWSUNIT00106459001 chr16:4,304,137..4,304,751 (615 pb) | VV78X023914.6 (2,142..2,756) |
Caulimoviridae, Caulimovirus | ||||
Cauliflower mosaic virus | ORFV (RT- like) | 42% | GWSUNIT00143618001 chr2:8,872,185..8,872,457 (273 pb) | VV78X033617.59 (6,979..6,711) |
Strawberry vein banding virus | ORFV (hyp. prot. gp5, RT-like) | 59% | GWSUNIT00639966001 chr6:12,644,211..12,644,470 (259 bp) | VV78X129432.8 (1757..1498) |
Strawberry vein banding virus | ORFV (hyp. prot. gp5, RT-like) | 52% | GWSUNIT02153655001 chr8:4,148,212..4,148,460 (249 pb) | VV78X220330.2 (536..289) |
Lamium leaf distortion associated virus | RT | 40% | GWSUNIT03347081001 chr1 random:117,898,214..117,899,037 (824 pb) | VV78X277334.5 (2,278..1,453) |
Lamium leaf distortion associated virus | RT | 41% | GWSUNIT02168324001 chr8:6,149,976..6,150,701 (725 bp) | VV78X035320.7 (6,816..6,090) |
Carnation etched ring virus | ORFV (RT- like) | 42% | GWSUNIT00216016001 chr2:16,370,519..16,370,830 (312 pb) | VV79X003991.5 (14,124..14,435) |
Carnation etched ring virus | ORFV (RT- like) | 30% | GWSUNIT02375514001 chr4:13,714,314..13,715,033 (720 pb) | VV78X034163.2 (1530..2244) |
Carnation etched ring virus | ORFV (RT- like) | 34% | GWSUNIT01803617001 chr5:2,240,705..2,241,424 (720 pb) | VV78X065575.6 (4,015..4,734) |
Carnation etched ring virus | ORFV (RT- like) | 39% | GWSUNIT03187498001 chr10:4,303,075..4,303,794 (720 pb) | VV79X003991.5 (14,004..14,723) |
Carnation etched ring virus | ORFV (RT- like) | 37% | GWSUNIT00972265001 chr11:11,149,476..11,150,121 (646 pb) | VV78X111735.9 (2,609..1,964) |
Carnation etched ring virus | ORFV (RT- like) | 40% | GWSUNIT01132815001 chr17:2,076,764..2,077,483 (720 pb) | VV78X105441.6 (1,428..710) |