Skip to main content

Table 4 Proportions of synonymous sites (S%) and estimates of Ka, Ks and ω

From: γ-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates

Method κR - κY > 0.4 κR - κY < -0.4 R - κY| ≤ 0.4
  S% Ka Ks ω S% Ka Ks ω S% Ka Ks ω
human-dog orthologs
GY 24.80% 0.0691 0.4936 0.1483 24.72% 0.0723 0.4676 0.1639 24.34% 0.0874 0.5347 0.1704
YN 25.09% 0.0674 0.4900 0.1531 24.96% 0.0700 0.4750 0.1695 24.27% 0.0928 0.5412 0.1746
MYN 23.88% 0.0664 0.5748 0.1361 26.16% 0.0711 0.4495 0.1800 24.22% 0.0939 0.5596 0.1727
γ-MYN 23.93% 0.0681 0.6462 0.1266 26.28% 0.0733 0.4962 0.1713 24.29% 0.0962 0.6227 0.1620
human-mouse orthologs
GY 25.86% 0.0901 0.7163 0.1291 25.65% 0.0961 0.7118 0.1390 25.52% 0.1128 0.7422 0.1543
YN 26.07% 0.0877 0.7002 0.1344 25.69% 0.0923 0.6904 0.1465 25.31% 0.1091 0.7439 0.1564
MYN 24.83% 0.0863 0.8321 0.1157 26.93% 0.0940 0.6527 0.1566 25.24% 0.1090 0.7734 0.1526
γ-MYN 24.91% 0.0894 0.9501 0.1058 27.10% 0.0980 0.7390 0.1468 25.35% 0.1140 0.8934 0.1398
human-chimp orthologs
GY 25.47% 0.0273 0.0663 0.5118 25.18% 0.0262 0.0579 0.5685 25.98% 0.0228 0.0420 0.4364
YN 25.79% 0.0302 0.0646 0.5237 25.33% 0.0297 0.0564 0.5790 23.81% 0.0506 0.0595 0.3893
MYN 24.34% 0.0299 0.0719 0.4792 26.87% 0.0307 0.0516 0.6312 23.72% 0.0493 0.0601 0.3863
γ-MYN 24.34% 0.0305 0.0741 0.4768 26.89% 0.0324 0.0530 0.6309 23.72% 0.0515 0.0626 0.3847