Table 1 properties of lancelet GFP-like genes and their products.
From: A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae
B. floridaegenes | JGI gene model ID – JGI model name | Comments | Identity to other LanFP proteins, % | ESTs (source tissues) | Identity (%) and gene ID of the best match in B. lanceolatum/in copepods |
|---|---|---|---|---|---|
LanFP1 | 7875 – FGENESH2_PG.SCAFFOLD_1000062 | 48–90 | 21 (egg, larva, neurula) | 51% 169125805/32% 33243028 | |
LanFP2 | 7877 – FGENESH2_PG.SCAFFOLD_1000064 | 51–99 | 33 (adult, egg, gastrula, neurula) | 57% 169125805/36% 33243028 | |
LanFP3 | 31376 – FGENESH2_PG.SCAFFOLD_264000004 | 49–61 | 19 (neurula, gastrula, egg, larva) | 51% 169125805/34% 33243028 | |
LanFP4 | 7879 – FGENESH2_PG. SCAFFOLD_1000066 | 51–98 | 15 (egg, larva) | 57% 169125805/36% 33243028 | |
LanFP5 | 3655 – ESTEXT_FGENESH2_PG.C_4080036 | two fused GFP-like proteins? | 50–54 | 1 (adult) | 39% 33243028/76% 169125805 (84% 169125805) |
LanFP6 | 7878 – FGENESH2_PG.SCAFFOLD_1000065 | 51–97 | 1 (larva) | 54% 169125805/37% 33243028 | |
LanFP7 | 21366 – ESTEXT_FGENESH2_PG.C_2370020 | 48–60 | 1 (larva) | 56% 169125805/40% 33243028 | |
LanFP8 | 11646 – FGENESH2_PG.SCAFFOLD_58000032 | 54–70 | 91% 169125797/40% 33243028 | ||
LanFP9 | 33503 -FGENESH2_PG.SCAFFOLD_549000016 | 49–55 | 52% 169125805/33% 33243028 | ||
LanFP10 | 11648 – FGENESH2_PG.SCAFFOLD_58000034 | 48–82 | 77% 169125805/37% 33243032 | ||
LanFP11 | 35422 – FGENESH2_PG.SCAFFOLD_722000001 | 48–56 | 72% 169125805/38% 33243028 | ||
LanFP12 | 7881 – FGENESH2_PG.SCAFFOLD_1000068 | 49–55 | 69% 169125805/30% 33243032 | ||
LanFP13 | 3657 – FGENESH2_PG.SCAFFOLD_408000038 | 50–84 | 79% 169125805/36% 33243034 | ||
7876 – FGENESH2_PG.SCAFFOLD_1000063 | similar to LanFP7, internal deletion | ||||
43701 – FGENESH2_PG.SCAFFOLD_149000048 | similar to LanFP11; long unrelated N-terminal extension – probably prediction artefact | ||||
43778 – FGENESH2_PG.SCAFFOLD_150000025 | similar to LanFP13 | ||||
31374 -FGENESH2_PG.SCAFFOLD_264000002 | similar to LanFP6; long insertion | ||||
31375 -FGENESH2_PG.SCAFFOLD_264000003 | similar to LanFP12 | ||||
3656- FGENESH2_PG.SCAFFOLD_408000037 | similar to LanFP10 | ||||
33504- FGENESH2_PG.SCAFFOLD_549000017 | similar to LanFP4 | ||||
11648 – FGENESH2_PG.SCAFFOLD_58000033 | similar to LanFP6 | ||||
11649 – FGENESH2_PG.SCAFFOLD_58000035 | similar to LanFP7 | ||||
11650 -FGENESH2_PG.SCAFFOLD_58000036 | similar to LanFP7 | ||||
35196 – FGENESH2_PG.SCAFFOLD_771000005 | similar to LanFP4 |