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Table 2 Summary* of haplotype detection, diversity estimates and information regarding hosts infected with K1, KV115 or wild isolates.

From: Genetic characterization of Hawaiian isolates of Plasmodium relictumreveals mixed-genotype infections

 

Isolate K1

Isolate KV115

Wild Isolates

Bird ID

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

17

18

Species

H

H

H

H

H

H

H

H

H

H

H

H

I

A

H

E

E

H

Island

K

K

K

K

K

K

H

H

H

H

H

K

H

H

M

K

K

H

Survivorship

S

S

S

F

F

F

F

F

S

F

F

ND

ND

ND

ND

ND

ND

ND

1289 bp site

P

P

ND

P

P

P

A

ND

A

A

A

A

P

ND

ND

A

P

A

Haplotype 1

   

1

   

1

          

3

 

1

 

1

              

4

  

2

  

1

            

8

    

1

  

1

 

1

   

1

 

1

  

10

 

1

              

1

 

12

1

1

 

1

1

1

  

1

      

1

1

 

20

  

2

   

1

 

1

1

  

2

     

25

     

1

    

1

 

1

     

27

 

1

   

3

            

30

       

1

 

1

  

2

   

1

 

33

   

1

 

1

  

1

1

 

1

      

34

    

1

 

1

        

1

  

36

   

1

            

1

 

41

    

2

  

1

 

1

        

44

             

1

  

1

 

45

  

1

     

1

 

1

       

47

        

1

2

1

       

49

        

1

 

2

       

51

    

1

 

1

           

53

1

        

1

        

56

   

1

      

1

       

57

   

1

  

1

 

1

1

        

58

  

1

  

1

            

59

    

1

     

2

  

1

   

1

61

1

        

1

   

1

    

62

     

1

    

3

       

73

 

1

         

1

      

77

13

11

11

26

19

47

12

4

10

24

44

4

4

5

2

5

1

0

Total Haplotypes

3

6

5

8

7

8

5

5

8

10

8

3

4

5

1

4

6

1

Total # clones

16

16

17

33

26

56

16

8

17

34

55

6

9

9

2

8

6

1

Freq. Hap 77

0.81

0.69

0.65

0.79

0.73

0.57

0.75

0.5

0.59

0.71

0.8

0.67

0.44

0.56

n/a

0.63

0.17

n/a

D (Simpson's)

1.49

2.03

2.21

1.59

1.83

1.41

1.73

3.2

2.7

1.97

1.55

2

3.24

2.79

n/a

2.29

6

n/a

H (S-W)

0.69

1.12

1.12

0.93

1.05

0.91

0.91

1.39

1.48

1.24

0.87

0.87

1.27

1.3

n/a

1.07

1.79

n/a

Hap/Clones ratio

0.19

0.38

0.29

0.24

0.27

0.15

0.31

0.63

0.47

0.29

0.15

0.50

0.44

0.56

n/a

0.50

1.00

n/a

  1. *Birds are identified as in Table 1. Species are abbreviated as: H (Hawaiian 'Amakihi), I (I'iwi), A ('Apapane), and E (Elepaio). Island abbreviations are: K (Kauai), H (Hawai'i), M (Maui). Survivorship to malaria challenge is abbreviated as: F (fatality) and S (survivor). Designations at the 1289 bp site are either the amino acid P (proline) or A (alanine). ND (no data).