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Table 7 Tight junction genes in human spermatogenesis data.

From: On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation

  

σ μ

σ wtrep

 

Gene Symbol

RefSeq ID

log2FC

P-value

log2FC

P-value

Gene Description

ACTG1

NM_001614

-0.81

0.064

-1.14

0.000

actin, gamma 1

CLDN1

NM_021101

-2.47

0.059

-1.63

0.000

claudin 1

CLDN16

NM_006580

-1.20

0.019

-1.55

0.000

claudin 16

CLDN5

NM_003277

1.15

0.286

1.42

0.000

claudin 5 (transmembrane protein deleted in velocardiofacial syndrome)

CLDN6

NM_021195

2.48

0.135

1.88

0.000

claudin 6

CSNK2A2

NM_001896

-1.00

0.014

-1.57

0.000

casein kinase 2, alpha prime polypeptide

CTNNA1

NM_001903

-0.93

0.009

-1.04

0.000

catenin (cadherin-associated protein), alpha 1, 102 kDa

EXOC3

NM_007277

-1.26

0.019

-1.43

0.000

exocyst complex component 3

EXOC4

NM_021807

-0.78

0.012

-1.04

0.000

exocyst complex component 4

GNAI2

NM_002070

1.02

0.110

1.52

0.000

guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2

JAM3

NM_032801

-0.86

0.005

-1.07

0.000

junctional adhesion molecule 3

KRAS

NM_004985

-2.85

0.032

-2.43

0.000

v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog

MYH9

NM_002473

1.09

0.183

1.02

0.000

myosin, heavy chain 9, non-muscle

PPP2R2B

NM_181676

-1.22

0.020

-1.97

0.000

protein phosphatase 2 (formerly 2A), regulatory subunit B, beta isoform

PPP2R3A

NM_002718

1.42

0.013

1.50

0.000

protein phosphatase 2 (formerly 2A), regulatory subunit B", alpha

RAB13

NM_002870

-1.17

0.118

-1.68

0.000

RAB13, member RAS oncogene family

TJP1

NM_175610

-2.63

0.038

-2.10

0.000

tight junction protein 1 (zona occludens 1)

AKT3

NM_181690

-1.16

0.001

-1.16

0.000

v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)

CDC42

NM_044472

-1.67

0.001

-1.51

0.000

cell division cycle 42 (GTP binding protein, 25 kDa)

CLDN11

NM_005602

-2.03

0.000

-2.06

0.000

claudin 11 (oligodendrocyte transmembrane protein)

CLDN14

NM_012130

2.92

0.006

2.90

0.000

claudin 14

CSDA

NM_003651

-2.28

0.000

-2.48

0.000

cold shock domain protein A

CSNK2B

NM_001320

-2.61

0.006

-2.69

0.000

casein kinase 2, beta polypeptide

CTNNA2

NM_004389

-1.64

0.002

-1.88

0.000

catenin (cadherin-associated protein), alpha 2

CTTN

NM_138565

-1.91

0.008

-2.05

0.000

cortactin

EPB41L3

NM_012307

-1.85

0.001

-1.71

0.000

erythrocyte membrane protein band 4.1-like 3

MYH10

NM_005964

-1.34

0.000

-1.35

0.000

myosin, heavy chain 10, non-muscle

MYL6

NM_079423

-1.62

0.000

-1.78

0.000

myosin, light chain 6, alkali, smooth muscle and non-muscle

PPP2CA

NM_002715

-2.69

0.002

-2.40

0.000

protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform

PPP2CB

NM_004156

-1.43

0.005

-1.83

0.000

protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform

PPP2R1B

NM_181699

-2.14

0.003

-2.34

0.000

protein phosphatase 2 (formerly 2A), regulatory subunit A, beta isoform

PPP2R1B

NM_181699

-1.47

0.011

-1.18

0.000

protein phosphatase 2 (formerly 2A), regulatory subunit A, beta isoform

PPP2R2A

NM_002717

-1.53

0.002

-1.86

0.000

protein phosphatase 2 (formerly 2A), regulatory subunit B, alpha isoform

PPP2R2B

NM_181677

2.51

0.007

2.29

0.000

protein phosphatase 2 (formerly 2A), regulatory subunit B, beta isoform

PRKCH

NM_006255

-1.20

0.002

-1.03

0.000

protein kinase C, eta

PTEN

NM_000314

-2.30

0.004

-1.61

0.000

phosphatase and tensin homolog (mutated in multiple advanced cancers 1)

RHOA

NM_001664

-1.81

0.001

-1.58

0.000

ras homolog gene family, member A

CTNNA3

NM_013266

-1.03

0.007

-0.92

0.000

catenin (cadherin-associated protein), alpha 3

  1. The first, second and last column indicate the gene symbol, the RefSeq ID and the description of each Tight junction gene respectively. The third and fourth columns indicate the logarithm fold change and the P-value of each gene found by using σ μ as the summary statistic. The fifth and sixth columns indicate the logarithm fold change and the P-value of each gene found by using σ wtrep as the summary statistic. A cutoff criteria of p ≤ 0.01 and |FC| ≥ 2 was applied. The first 17 genes are found to be statistically significant by σ wtrep only. The last row contain a gene excluded by σ wtrep due to |FC| ≤ 2 although p ≤ 0.01. The genes upper in the section were found only by the σ wtrep statistic, the remainder was found with both approaches except of the last gene entry recovered only by the σ μ statistic (it was filtered out due the fold change criterion).