On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation

Table 3 KEGG pathways elucidated from the MT1-MMP data.

KEGG pathway	σ _μ [7]	σ _μ	σ _wtrep
HSA01430 : Cell communication	✓	✓	✓
HSA04540 : Gap junction	✓	✓	✓
HSA04610 : Complement and coagulation cascades	✓	✓	✓
HSA04110 : Cell cycle			✓

The first column indicates the name of the KEGG pathways. Only KEGG pathways with EASE score ≤ 0.05 and count ≥ 5 are included. The second to fourth columns indicate KEGG pathway found by Golubkov V.S. et. al. [7], σ_μand σ_wtreprespectively. Cutoff criteria of EASE score ≤ 0.05 and count ≥ 5 was applied.

ISSN: 1745-6150