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Table 1 Intensity output of Illumina & Affymetrix across K technical replicates

From: On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation

Platform

Replicate 1

Replicate 2

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Replicate K

Illumina BeadChip (Raw data)

X 1 ¯ = [ x 1 , 1 x 1 , 2 ⋮ x 1 , N 1 ] MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaWaa0aaaeaacqWGybawdaWgaaWcbaGaeGymaedabeaaaaGccqGH9aqpdaWadaqaauaabeqaeeaaaaqaaiabdIha4naaBaaaleaacqaIXaqmcqGGSaalcqaIXaqmaeqaaaGcbaGaemiEaG3aaSbaaSqaaiabigdaXiabcYcaSiabikdaYaqabaaakeaacqWIUlstaeaacqWG4baEdaWgaaWcbaGaeGymaeJaeiilaWIaemOta40aaSbaaWqaaiabigdaXaqabaaaleqaaaaaaOGaay5waiaaw2faaaaa@41E8@

X 2 ¯ = [ x 2 , 1 x 2 , 2 ⋮ x 2 , N 2 ] MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaWaa0aaaeaacqWGybawdaWgaaWcbaGaeGOmaidabeaaaaGccqGH9aqpdaWadaqaauaabeqaeeaaaaqaaiabdIha4naaBaaaleaacqaIYaGmcqGGSaalcqaIXaqmaeqaaaGcbaGaemiEaG3aaSbaaSqaaiabikdaYiabcYcaSiabikdaYaqabaaakeaacqWIUlstaeaacqWG4baEdaWgaaWcbaGaeGOmaiJaeiilaWIaemOta40aaSbaaWqaaiabikdaYaqabaaaleqaaaaaaOGaay5waiaaw2faaaaa@41F2@

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X K ¯ = [ x K , 1 x K , 2 ⋮ x K , N K ] MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaWaa0aaaeaacqWGybawdaWgaaWcbaGaem4saSeabeaaaaGccqGH9aqpdaWadaqaauaabeqaeeaaaaqaaiabdIha4naaBaaaleaacqWGlbWscqGGSaalcqaIXaqmaeqaaaGcbaGaemiEaG3aaSbaaSqaaiabdUealjabcYcaSiabikdaYaqabaaakeaacqWIUlstaeaacqWG4baEdaWgaaWcbaGaem4saSKaeiilaWIaemOta40aaSbaaWqaaiabdUealbqabaaaleqaaaaaaOGaay5waiaaw2faaaaa@42D3@

Illumina BeadChip (Summary data)

μ 1 , σ 1 M 1 , M 1 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqiVd02aaSbaaSqaaiabigdaXaqabaGccqGGSaaljuaGdaWcaaqaaiabeo8aZnaaBaaabaGaeGymaedabeaaaeaadaGcaaqaaiabd2eannaaBaaabaGaeGymaedabeaaaeqaaaaakiabcYcaSiabd2eannaaBaaaleaacqaIXaqmaeqaaaaa@3870@

μ 2 , σ 2 M 2 , M 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqiVd02aaSbaaSqaaiabikdaYaqabaGccqGGSaaljuaGdaWcaaqaaiabeo8aZnaaBaaabaGaeGOmaidabeaaaeaadaGcaaqaaiabd2eannaaBaaabaGaeGOmaidabeaaaeqaaaaakiabcYcaSiabd2eannaaBaaaleaacqaIYaGmaeqaaaaa@3878@

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μ K , σ K M K , M K MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqiVd02aaSbaaSqaaiabdUealbqabaGccqGGSaaljuaGdaWcaaqaaiabeo8aZnaaBaaabaGaem4saSeabeaaaeaadaGcaaqaaiabd2eannaaBaaabaGaem4saSeabeaaaeqaaaaakiabcYcaSiabd2eannaaBaaaleaacqWGlbWsaeqaaaaa@392C@

Affymetrix GeneChip (Raw data)

x 1,1

x 2,1

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X K,1