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Table 7 The number of the Subset 1 RefSeq alignments at various levels of the overall identity. Fractions give the differences in the number of alignments by each method and Splign expressed as percentage of the total of sequences in the set.

From: Splign: algorithms for computing spliced alignments with identification of paralogs

  85% 90% 95% 99% 99.5% 99.9% 100%
Splign 13883 13880 13870 13781 13540 11345 8276
Sim4 13880 13873 13832 13615 13287 10521 7151
  -0.02 -0.05 -0.27 -1.20 -1.82 -5.94 -8.10
Spidey 13765 13602 13379 13085 12802 10601 7587
  -0.85 -2.00 -3.54 -5.01 -5.32 -5.36 -4.96
BLAT 13878 13866 13843 13680 13355 11180 8167
  -0.04 -0.10 -0.19 -0.73 -1.33 -1.19 -0.79
GMAP 13879 13875 13864 13753 13481 11291 8066
  -0.03 -0.04 -0.04 -0.20 -0.42 -0.39 -1.51
SPA 13878 13868 13855 13738 13502 11290 8174
  -0.04 -0.09 -0.11 -0.31 -0.27 -0.40 -0.73