Skip to main content

Table 6 The number of the Subset 1 alignments at various levels of the overall identity. Fractions give the differences in the number of alignments by each method and Splign expressed as percentage of the total of sequences in the set.

From: Splign: algorithms for computing spliced alignments with identification of paralogs

  85% 90% 95% 99% 99.5% 99.9% 100%
Splign 72047 71922 71568 68890 65666 43046 25931
Sim4 72013 71830 71316 68055 63919 39272 23249
  -0.05 -0.13 -0.35 -1.16 -2.42 -5.23 -3.72
Spidey 71562 70833 69744 66128 62461 40456 24578
  -0.67 -1.51 -2.53 -3.83 -4.44 -3.59 -1.88
BLAT 72010 71842 71393 67508 63319 41693 25357
  -0.05 -0.11 -0.24 -1.92 -3.25 -1.88 -0.80
GMAP 72001 71843 71459 68446 64787 42263 25335
  -0.06 -0.11 -0.15 -0.62 -1.22 -1.09 -0.83
SPA 71993 71823 71406 68578 65368 43043 25736
  -0.07 -0.14 -0.22 -0.43 -0.41 0.00 -0.27