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Table 2 The number of best alignments with A-content of 75% or higher in the 3' exon. The numbers are based on the alignments with the highest overall identity.

From: Splign: algorithms for computing spliced alignments with identification of paralogs

 

Sim4

Spidey

BLAT

GMAP

SPA

Splign

%% of all mRNAs

15.5

0.57

0.98

0.04

2.12

0.01

%% of RefSeq mRNAs

22.1

0.31

1.67

0.02

2.72

0.00