Table 12 Co-aligning EST test. 'Implied' is the number of introns estimated from EST-to-mRNA and mRNA-to-genomic alignments. 'Identified' is the number of introns found in EST-to-genomic alignments. 'Matching' is the number of introns in EST-to-genomic alignment matching those found in the mRNA-to-genomic alignments.
From: Splign: algorithms for computing spliced alignments with identification of paralogs
| Â | Sim4 | Spidey | BLAT | GMAP | SPA | Splign |
|---|---|---|---|---|---|---|
Implied | 3472173 | 3419307 | 3417203 | 3419975 | 3425734 | 3419138 |
Identified, as %% of Implied | 3174725 | 3249426 | 3150040 | 3219665 | 3407890 | 3352628 |
| Â | 91.4 | 95.0 | 92.2 | 94.1 | 99.5 | 98.1 |
Matching, as %% of Identified | 3128325 | 2813461 | 2810059 | 3202121 | 3294548 | 3314074 |
| Â | 98.5 | 86.6 | 89.2 | 99.5 | 96.7 | 98.9 |