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Table 12 Co-aligning EST test. 'Implied' is the number of introns estimated from EST-to-mRNA and mRNA-to-genomic alignments. 'Identified' is the number of introns found in EST-to-genomic alignments. 'Matching' is the number of introns in EST-to-genomic alignment matching those found in the mRNA-to-genomic alignments.

From: Splign: algorithms for computing spliced alignments with identification of paralogs

  Sim4 Spidey BLAT GMAP SPA Splign
Implied 3472173 3419307 3417203 3419975 3425734 3419138
Identified, as %% of Implied 3174725 3249426 3150040 3219665 3407890 3352628
  91.4 95.0 92.2 94.1 99.5 98.1
Matching, as %% of Identified 3128325 2813461 2810059 3202121 3294548 3314074
  98.5 86.6 89.2 99.5 96.7 98.9