Figure 3
From: Evaluating the protein coding potential of exonized transposable element sequences
Phylogenetic relationship of TE and cellular THAP domains. Neighbor-joining trees of seven THAP homologous TE sequences and seventeen cellular THAP sequences from various species are shown. The trees were created based on (A) the multiple sequence alignment of all THAP sequences and (B) the pairwise gamma distance matrix calculated from BLAST all-against-all pairwise alignments. TE-THAP sequences are indicated by red triangle marks. Bootstrap values (A) represent the fraction of times that internal branches, supporting clades, were recovered among trees built from 1,000 re-sampled alignments.