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Table 5 HVR2 genes.

From: Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data

Gene number

Gene product

Functional category

TM helices

Non-syntenic hits

SAR11_0524

unknown

unknown

 

0

SAR11_0525

nucleotide sugar epimerase

CHO metabolism

 

1

SAR11_0526

nucleotide sugar epimerase

CHO metabolism

 

3

SAR11_0527

acetolactate synthase

aa metabolism

 

5

SAR11_0528

methyl transferase

aa metabolism

 

22

SAR11_0529

alcohol dehydrogenase

cho metabolism

 

11

SAR11_0530

phospholipid synthase

om

 

6

SAR11_0531

short-chain dehyrogenase

CHO metabolism

 

4

SAR11_0532

oxidoreductase

unknown specificity

1

0

SAR11_0533

methyltransferase

unknown specificity

 

2

SAR11_0534

aminotransferase

unknown

2

3

SAR11_0535

unknown

unknown

1

0

SAR11_0536

tktc

pentose-phosphate

 

5

SAR11_0537

tktn

pentose-phosphate

 

11

SAR11_0538

nucleotide sugar epimerase

CHO metabolism

 

34

SAR11_0539

carbohydrate kinase

CHO metabolism

 

47

SAR11_0540

glycosyl transferase

CHO metabolism

2

2

SAR11_0541

nucleotide sugar dehydratasez

nt-CHO metabolism

 

11

SAR11_0542

unknown

unknown

9

0

SAR11_0543

unknown

unknown

3

0

SAR11_0544

unknown

unknown

4

0

SAR11_0545

phosphoheptose isomerase

CHO metabolism

 

10

SAR11_0546

sugar phoshatase

om

 

4

SAR11_0547

amino-acid oxidase

aa metabolism

 

15

SAR11_0548

unknown

unknown

10

0

SAR11_0549

unknown

unknown

10

0

SAR11_0550

glycosyl transferase

om

 

9

SAR11_0551

probable phage integrase

unknown

 

3

SAR11_0552

glycosyl tranferase

om

 

2

SAR11_0553

amino transferase

om

 

5

SAR11_0554

carbamoyl transferase

antibiotic synthesis

 

57

SAR11_0555

phospholipid synthase

om

 

0

SAR11_0556

glycosyl tranferase

om

 

2

SAR11_0557

glycosyl tranferase

om

3

2

SAR11_0558

phospholipid synthase

om

 

0

SAR11_0559

trehalose phosphate synthase

om

 

0

SAR11_0560

methyl transferase

unknown

 

0

SAR11_0561

oxidoreductase

phytobilin synthesis

 

1

SAR11_0563

glycosyl transferase

cho metabolism

 

4

SAR11_0564

unknown

unknown

 

1

SAR11_0565

unknown

unknown

 

13

SAR11_0566

o-antigen polymerase

om

10

40

SAR11_0567

unknown

unknown

11

55

SAR11_0568

oxidoreductase

aa metabolism

 

1

  1. Bold font indicates genes involved in inner and outer core lipopolysaccharide (LPS) biosynthesis. Genes involved in the biosynthesis of the unexposed (lipid-A portion) of LPS are not present in HVR2. (om) outer membrane; (CHO) carbohydrate; (aa) amino acid