| Synonymous | Nonsynonymous | ||||
---|---|---|---|---|---|---|
 | Overall1 | Parallel2 | Overall3 | Coincident | ||
 |  |  |  | Parallel4 | Divergent5 | |
 |  |  |  |  | Same site | Different site |
Pairs of nucleotides | Â | Â | Â | Â | Â | Â |
   AC | 0.055 | 0.061 | 0.0037 (6.8%) | 0.035 (132, 57.2%) | 0.018 (217, 29.6%) | 0.012 (223, 20.0%) |
   AG | 0.198 | 0.218 | 0.0189 (9.5%) | 0.110 (1941, 50.5%) | 0.070 (459, 31.9%) | 0.054 (851, 24.6%) |
   AT | 0.044 | 0.064 | 0.0029 (6.6%) | 0.038 (116, 59.2%) | 0.015 (158, 24.0%) | 0.006 (107, 9.2%) |
   CG | 0.061 | 0.074 | 0.0053 (8.6%) | 0.039 (117, 52.7%) | 0.021 (214, 28.3%) | 0.014 (129, 18.6%) |
   CT | 0.169 | 0.208 | 0.0090 (5.3%) | 0.095 (476, 45.7%) | 0.044 (249, 21.1%) | 0.025 (310, 11.9%) |
   GT | 0.044 | 0.062 | 0.0025 (5.6%) | 0.047 (76, 76.1%) | 0.012 (143, 19.4%) | 0.007 (64, 11.1%) |
   Average | 0.095 | 0.115 | 0.0070 (7.4%) | 0.061 (2858, 53.0%) | 0.030 (1440, 26.2%) | 0.020 (1684, 17.1%) |
Genes6 | Â | Â | Â | Â | Â | Â |
   Low d N | 0.085 | 0.110 | 0.0029 (3.4%) | 0.049 (403, 45.0%) | 0.015 (135, 13.7%) | 0.011 (161, 10.1%) |
   Intermediate d N | 0.101 | 0.117 | 0.0070 (6.9%) | 0.062 (976, 52.6%) | 0.027 (435, 23.0%) | 0.018 (527, 15.2%) |
   High d N | 0.103 | 0.117 | 0.0128 (12.5%) | 0.064 (1479, 54.3%) | 0.038 (870, 32.1%) | 0.024 (996, 20.3%) |
Chemical distance between amino acids7 | Â | Â | Â | Â | Â | Â |
   1 | 0.095 | 0.115 | 0.0070 (7.4%) | 0.060 (969, 52.7%) | 0.016 (308, 13.7%) | 0.019 (434, 16.2%) |
   1.5 or 2 | 0.095 | 0.115 | 0.0070 (7.4%) | 0.061 (1482, 53.0%) | 0.032 (729, 27.9%) | 0.018 (892, 15.4%) |
   2.5 or 3 | 0.095 | 0.115 | 0.0070 (7.4%) | 0.053 (407, 46.7%) | 0.040 (403, 34.6%) | 0.032 (358, 28.0%) |