From: Small but versatile: the extraordinary functional and structural diversity of the β-grasp fold
Higher-order Classification | Lineage Name | Secondary Structural Features Common to the β-GF Fold1 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S1 | L1 | S2 | L2 | H | L3/LS | S3 | L4 | S4 | L5/CA | S5 | tail | notes | ||
Basal 4-stranded versions of the β-GF | IF3-N | S1 | -- | S2 | -- | H | -- | S3 | -- | O | O | S5 | -- | |
Archeo-eukaryotic RNA poly. β-subunit | S1 | -- | S2 | -- | H | -- | S3 | -- | O | O | S5 | -- | ||
Sporadically-distributed 4-stranded versions | Yml108w | S1 | cc | S2 | -- | H | -- | S3 | -- | O | O | S5 | h | |
BofC | S1 | -- | S2 | -- | H | -- | S3 | -- | O | O | S5 | -- | ||
Immunoglobulin-binding | S1 | -- | S2 | -- | H | -- | S3 | -- | O | O | S5 | -- | ||
POZ | S1 | -- | S2 | -- | H | h | S3 | -- | O | O | S5 | -- | ||
Nudix superfamily | Nudix (MutT) | S1 | -- | S(ee)2 | -- | H | * | S3 | -- | O | O | S5 | e | |
Fasciclin-like assemblage | L25 | S1 | -- | S2 | -- | H | ee* | S3 | -- | O | O | S5 | -- | 3 |
glutamine synthetase N-terminal | S1 | -- | S2 | -- | H | eee* | S3 | -- | O | O | S5 | -- | 3 | |
fasciclin | S1 | hhh | S2 | -- | H | ee* | S3 | -- | O | O | S5 | -- | 3 | |
phosphoribosyl AMP cyclohydrolase (HisI) | S1 | -- | S2 | -- | H | ee* | S3 | -- | O | O | S5 | -- | 3,4 | |
5-stranded assemblage: classical 5-stranded clade | MoaD | S1 | H | S2 | -- | H | h** | S3 | -- | S4 | * | S5 | -- | |
ThiS | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | * | S5 | -- | ||
TmoB | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | * | S5 | -- | ||
Superantigen | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | h* | S5 | -- | ||
Strepto/Staphylokinase | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | * | S5 | -- | ||
YukD | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | * | S5 | -- | ||
TGS | S1 | -- | S2 | -- | H | h* | S3 | -- | S4 | * | S5 | -- | ||
Aldehyde OR2 N-terminal domain | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | eh* | S5 | -- | ||
5-stranded assemblage: Selected eukaryote UB-like superfamily members | classic UB-like | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | * | S5 | -- | |
PB1 | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | h* | S5 | -- | ||
CAD/Doublecortin (DCX) | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | [h]* | S5 | -- | 6 | |
RA | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | h* | S5 | -- | ||
Elongin | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | * | S5 | -- | ||
UBX | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | * | S5 | -- | ||
E1/UFD | O | -- | S2 | -- | H | * | S3 | -- | S4 | * | S5 | S6 | 7 | |
5-stranded assemblage: soluble ligand binding or metal ion chelating clade | molydopterin-dependent oxidoreductase | S1 | -- | S2 | hehee | H | * | S3 | -- | S4 | eee* | S5 | -- | |
SLBB: Nqo1-type | S1 | -- | S2 | -- | H | * | S3 | -- | S4 | hh* | S5 | -- | 5 | |
SLBB: transcobalamin-type | S1 | -- | S2 | -- | H | eee* | S3 | -- | S4 | * | S5 | -- | ||
2Fe-2S ferredoxin | S1 | -- | S2 | -- | H | cc* | S3 | -- | S4 | * | S5 | -- | ||
L-proline DH-like OR2 N-terminal domain | S1 | -- | S2 | -- | H | ee* | S3 | -- | S4 | * | S5 | -- | ||
Miscellaneous | WWE | S1 | -- | S2 | -- | H | e* | S3 | -- | O | O | S5 | e | 8 |
FimD N-terminal | S1 | -- | S2 | ee | H | * | S3 | -- | O | O | S5 | -- | ||
S4 | O | O | O | O | H | h* | S3 | -- | S4 | * | S5 | -- |