From: Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution
GeneChip/average/SD/CV | No. of probe sets | Cons. samp. size | No. of arrays | No. of comp. | Coefficient. of st. dev. function | Average Kalpha values in given probability intervals | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  |  | a1 | a2 | 0.500 | 0.600 | 0.700 | 0.800 | 0.900 | 0.950 | 0.990 | 0.995 |
Total average [sum] | Â | Â | [682] | [900] | 9.66 | 0.266 | 0.642 | 0.808 | 1.009 | 1.275 | 1.711 | 2.145 | 3.226 | 3.741 |
Total SD | Â | Â | Â | Â | 9.99 | 0.146 | 0.033 | 0.039 | 0.043 | 0.045 | 0.052 | 0.080 | 0.270 | 0.390 |
Total CV | Â | Â | Â | Â | 1.03 | 0.550 | 0.052 | 0.049 | 0.043 | 0.035 | 0.030 | 0.037 | 0.084 | 0.104 |
HuGeneFL [a1] | 7070 | 12 | 11 | 54 | 8.61 | 0.115 | 0.64 | 0.81 | 1.01 | 1.27 | 1.71 | 2.16 | 3.41 | 4.09 |
HuGeneFL [b] | 7070 | 12 | 13 | 78 | 8.09 | 0.418 | 0.61 | 0.77 | 0.97 | 1.24 | 1.73 | 2.24 | 3.58 | 4.18 |
HuGeneFL [c] | 7070 | 25 | 5 | 10 | 34.58 | 0.435 | 0.61 | 0.76 | 0.94 | 1.20 | 1.60 | 2.03 | 3.39 | 4.10 |
HuGeneFL [c] | 7070 | 25 | 5 | 10 | 28.93 | 0.393 | 0.59 | 0.73 | 0.92 | 1.18 | 1.60 | 2.07 | 3.42 | 4.07 |
HuGeneFL avg [sum] | Â | Â | [34] | [152] | 20.05 | 0.34 | 0.61 | 0.77 | 0.96 | 1.22 | 1.66 | 2.13 | 3.45 | 4.11 |
HuGeneFL SD | Â | Â | Â | Â | 13.71 | 0.15 | 0.02 | 0.03 | 0.04 | 0.04 | 0.07 | 0.10 | 0.09 | 0.05 |
HuGeneFL CV | Â | Â | Â | Â | 0.68 | 0.44 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.05 | 0.03 | 0.01 |
HG-U95Av2 [d] | 12559 | 12 | 5 | 10 | 6.30 | 0.688 | 0.61 | 0.78 | 1.00 | 1.30 | 1.83 | 2.32 | 2.98 | 3.26 |
HG-U95Av2 [e1] | 12559 | 25 | 15 | 15 | 10.49 | 0.199 | 0.65 | 0.82 | 1.01 | 1.27 | 1.68 | 2.07 | 3.05 | 3.55 |
HG-U95Av2 [e2] | 12559 | 25 | 15 | 15 | 10.59 | 0.200 | 0.64 | 0.81 | 1.01 | 1.26 | 1.67 | 2.07 | 3.07 | 3.56 |
HG-U95Av2 [e3] | 12559 | 25 | 15 | 15 | 10.41 | 0.189 | 0.63 | 0.80 | 1.00 | 1.25 | 1.66 | 2.07 | 3.06 | 3.55 |
HG-U95Av2 [e4] | 12559 | 25 | 12 | 12 | 10.91 | 0.185 | 0.63 | 0.79 | 0.99 | 1.24 | 1.66 | 2.04 | 3.02 | 3.50 |
HG-U95Av2 [e5] | 12559 | 25 | 4 | 2 | 6.50 | 0.394 | 0.65 | 0.82 | 1.01 | 1.26 | 1.65 | 2.05 | 3.05 | 3.62 |
HG-U95Av2 [f] | 12559 | 25 | 4 | 2 | 5.64 | 0.155 | 0.64 | 0.81 | 1.00 | 1.25 | 1.66 | 2.04 | 2.92 | 3.31 |
HG-U95Av2 [g1] | 12559 | 25 | 2 | 1 | 4.79 | 0.479 | 0.61 | 0.76 | 0.95 | 1.20 | 1.64 | 2.10 | 3.22 | 3.71 |
HG-U95Av2 [g1] | 12559 | 25 | 5 | 10 | 3.31 | 0.500 | 0.64 | 0.80 | 1.00 | 1.26 | 1.69 | 2.09 | 2.98 | 3.29 |
HG-U95Av2 avg [sum] | Â | Â | [77] | [82] | 7.66 | 0.33 | 0.63 | 0.80 | 1.00 | 1.26 | 1.68 | 2.09 | 3.04 | 3.48 |
HG-U95Av2 SD | Â | Â | Â | Â | 2.94 | 0.19 | 0.02 | 0.02 | 0.02 | 0.03 | 0.06 | 0.09 | 0.08 | 0.16 |
HG-U95Av2 CV | Â | Â | Â | Â | 0.38 | 0.57 | 0.02 | 0.02 | 0.02 | 0.02 | 0.04 | 0.04 | 0.03 | 0.05 |
HG-U95B [d] | 12563 | 12 | 5 | 10 | 16.26 | 0.636 | 0.63 | 0.80 | 1.01 | 1.30 | 1.80 | 2.28 | 3.18 | 3.68 |
HG-U95B [e5] | 12563 | 25 | 2 | 1 | 17.95 | 0.167 | 0.64 | 0.80 | 0.99 | 1.24 | 1.65 | 2.02 | 3.08 | 3.54 |
HG-U95C [d] | 12587 | 12 | 5 | 10 | 20.57 | 0.603 | 0.64 | 0.81 | 1.02 | 1.30 | 1.77 | 2.25 | 3.39 | 3.98 |
HG-U95C [e5] | 12587 | 25 | 2 | 1 | 16.42 | 0.178 | 0.63 | 0.79 | 0.99 | 1.23 | 1.62 | 2.00 | 3.06 | 3.61 |
HG-U95D [d] | 12587 | 12 | 5 | 10 | 39.79 | 0.501 | 0.62 | 0.78 | 0.99 | 1.28 | 1.77 | 2.33 | 3.80 | 4.42 |
HG-U95D [e5] | 12587 | 25 | 2 | 1 | 54.45 | 0.240 | 0.63 | 0.79 | 0.99 | 1.23 | 1.62 | 2.05 | 2.98 | 3.48 |
HG-U95E [d] | 12582 | 12 | 5 | 10 | 31.84 | 0.534 | 0.60 | 0.76 | 0.97 | 1.27 | 1.78 | 2.29 | 3.53 | 4.08 |
HG-U95E [e5] | 12582 | 25 | 2 | 1 | 45.64 | 0.215 | 0.63 | 0.79 | 1.00 | 1.25 | 1.64 | 2.02 | 2.88 | 3.31 |
HG-U95B to E avg [sum] | Â | Â | [28] | [44] | 30.37 | 0.38 | 0.63 | 0.79 | 0.99 | 1.26 | 1.71 | 2.16 | 3.24 | 3.76 |
HG-U95B to E SD | Â | Â | Â | Â | 14.87 | 0.20 | 0.01 | 0.01 | 0.02 | 0.03 | 0.08 | 0.14 | 0.31 | 0.37 |
HG-U95B to E CV | Â | Â | Â | Â | 0.49 | 0.53 | 0.02 | 0.02 | 0.02 | 0.02 | 0.05 | 0.07 | 0.10 | 0.10 |
HG-U133A 2.0 [e6] | 22225 | 25 | 15 | 15 | 4.55 | 0.091 | 0.65 | 0.82 | 1.02 | 1.28 | 1.72 | 2.14 | 3.14 | 3.62 |
HG-U133A 2.0 [e7] | 22225 | 25 | 15 | 15 | 4.50 | 0.106 | 0.66 | 0.84 | 1.04 | 1.31 | 1.75 | 2.17 | 3.18 | 3.63 |
HG-U133A 2.0 [e8] | 22225 | 25 | 12 | 12 | 4.10 | 0.108 | 0.67 | 0.84 | 1.05 | 1.32 | 1.77 | 2.21 | 3.26 | 3.75 |
HG-U133A 2.0 [h1] | 22225 | 25 | 8 | 4 | 3.91 | 0.288 | 0.64 | 0.80 | 1.00 | 1.26 | 1.67 | 2.08 | 3.05 | 3.54 |
HG-U133A 2.0 [i1] | 22225 | 12 | 4 | 6 | 6.25 | 0.210 | 0.65 | 0.82 | 1.01 | 1.27 | 1.68 | 2.08 | 3.04 | 3.48 |
HG-U133A 2.0 [j] | 22225 | 25 | 5 | 10 | 6.54 | 0.390 | 0.62 | 0.79 | 0.98 | 1.25 | 1.68 | 2.10 | 3.13 | 3.62 |
HG-U133A 2.0 [j] | 22225 | 25 | 5 | 10 | 5.54 | 0.393 | 0.62 | 0.79 | 0.98 | 1.25 | 1.66 | 2.08 | 3.10 | 3.64 |
HG-U133A 2.0 [k1] | 22225 | 25 | 6 | 15 | 3.68 | 0.672 | 0.63 | 0.80 | 1.00 | 1.27 | 1.71 | 2.11 | 2.84 | 3.16 |
HG-U133A 2.0 [k1] | 22225 | 25 | 3 | 3 | 4.95 | 0.435 | 0.59 | 0.74 | 0.93 | 1.19 | 1.65 | 2.15 | 3.37 | 3.79 |
HG-U133A 2.0 [l1] | 22225 | 25 | 6 | 3 | 6.45 | 0.151 | 0.64 | 0.81 | 1.01 | 1.27 | 1.68 | 2.08 | 3.06 | 3.55 |
HG-U133A 2.0 [l2] | 22225 | 25 | 12 | 6 | 6.78 | 0.148 | 0.65 | 0.82 | 1.02 | 1.27 | 1.67 | 2.06 | 2.93 | 3.33 |
HG-U133A 2.0 avg [sum] | Â | Â | [91] | [99] | 5.21 | 0.27 | 0.64 | 0.80 | 1.00 | 1.27 | 1.69 | 2.11 | 3.10 | 3.56 |
HG-U133A 2.0 SD | Â | Â | Â | Â | 1.15 | 0.18 | 0.02 | 0.03 | 0.03 | 0.03 | 0.04 | 0.05 | 0.15 | 0.18 |
HG-U133A 2.0 CV | Â | Â | Â | Â | 0.22 | 0.67 | 0.03 | 0.03 | 0.03 | 0.03 | 0.02 | 0.02 | 0.05 | 0.05 |
HG-U133 Plus 2 [i2] | 54000 | 50 | 8 | 10 | 3.94 | 0.188 | 0.68 | 0.85 | 1.06 | 1.33 | 1.76 | 2.17 | 3.11 | 3.55 |
HG-U133 Plus 2 [l3] | 54000 | 50 | 20 | 27 | 4.03 | 0.086 | 0.65 | 0.82 | 1.02 | 1.28 | 1.69 | 2.07 | 2.95 | 3.34 |
HG-U133 Plus 2 avg [sum] | Â | Â | [28] | [37] | 3.99 | 0.14 | 0.67 | 0.83 | 1.04 | 1.30 | 1.72 | 2.12 | 3.03 | 3.44 |
HG-Focus [k2] | 8756 | 12 | 9 | 36 | 4.13 | 0.216 | 0.70 | 0.87 | 1.08 | 1.35 | 1.76 | 2.15 | 3.06 | 3.47 |
HG-Focus [k2] | 8756 | 12 | 4 | 6 | 4.13 | 0.181 | 0.68 | 0.86 | 1.07 | 1.33 | 1.76 | 2.18 | 3.08 | 3.56 |
HG-Focus [k2] | 8756 | 12 | 4 | 6 | 3.90 | 0.198 | 0.70 | 0.87 | 1.08 | 1.36 | 1.81 | 2.22 | 3.15 | 3.55 |
HG-Focus [k2] | 8756 | 12 | 4 | 6 | 3.69 | 0.176 | 0.68 | 0.86 | 1.07 | 1.35 | 1.79 | 2.19 | 3.17 | 3.64 |
HG-Focus [k2] | 8756 | 12 | 5 | 10 | 3.46 | 0.183 | 0.67 | 0.85 | 1.05 | 1.33 | 1.77 | 2.19 | 3.12 | 3.49 |
HG-Focus [k2] | 8756 | 12 | 4 | 6 | 4.01 | 0.205 | 0.71 | 0.89 | 1.10 | 1.38 | 1.81 | 2.19 | 3.11 | 3.53 |
HG-Focus [k2] | 8756 | 12 | 4 | 6 | 3.98 | 0.174 | 0.68 | 0.85 | 1.06 | 1.32 | 1.74 | 2.14 | 3.06 | 3.43 |
HG-Focus avg [sum] | Â | Â | [34] | [76] | 3.90 | 0.19 | 0.69 | 0.86 | 1.07 | 1.35 | 1.78 | 2.18 | 3.11 | 3.52 |
HG-Focus SD | Â | Â | Â | Â | 0.24 | 0.02 | 0.01 | 0.02 | 0.02 | 0.02 | 0.03 | 0.03 | 0.04 | 0.07 |
HG-Focus CV | Â | Â | Â | Â | 0.06 | 0.08 | 0.02 | 0.02 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 |
MG-Mu11kSubA, SubB [a] | 13069 | 12 | 10 | 20 | 9.98 | 0.121 | 0.59 | 0.75 | 0.95 | 1.22 | 1.70 | 2.20 | 3.65 | 4.48 |
MG-Mu11kSubA, SubB [a] | 13069 | 12 | 10 | 20 | 8.03 | 0.170 | 0.59 | 0.74 | 0.94 | 1.20 | 1.68 | 2.19 | 3.78 | 4.66 |
MG-Mu11kSubA, SubB [a] | 13069 | 12 | 10 | 20 | 8.21 | 0.145 | 0.60 | 0.76 | 0.96 | 1.23 | 1.70 | 2.21 | 3.70 | 4.52 |
MG-Mu11kSubA, SubB [a] | 13069 | 12 | 10 | 20 | 5.32 | 0.139 | 0.56 | 0.71 | 0.91 | 1.19 | 1.71 | 2.30 | 4.03 | 4.84 |
MG-Mu11kSubA, SubB [m1] | 13069 | 12 | 8 | 4 | 13.86 | 0.321 | 0.64 | 0.81 | 1.01 | 1.28 | 1.73 | 2.22 | 3.62 | 4.24 |
MG Mu11kSubA, SubB [n1] | 13069 | 12 | 20 | 10 | 11.84 | 0.420 | 0.66 | 0.82 | 1.01 | 1.26 | 1.71 | 2.21 | 3.61 | 4.32 |
MG-Mu11kSubA, SubB avg [sum] | Â | Â | [68] | [94] | 9.54 | 0.219 | 0.61 | 0.77 | 0.96 | 1.23 | 1.70 | 2.22 | 3.73 | 4.51 |
MG-Mu11kSubA, SubB SD | Â | Â | Â | Â | 3.03 | 0.122 | 0.04 | 0.04 | 0.04 | 0.04 | 0.02 | 0.04 | 0.16 | 0.22 |
MG-Mu11kSubA, SubB CV | Â | Â | Â | Â | 0.32 | 0.557 | 0.06 | 0.05 | 0.04 | 0.03 | 0.01 | 0.02 | 0.04 | 0.05 |
Mu19kSubA, B, C [m2] | 12420 | 12 | 12 | 6 | 15.41 | 0.314 | 0.63 | 0.79 | 0.99 | 1.25 | 1.73 | 2.26 | 3.95 | 4.56 |
MG-U74Av2 [o] | 12588 | 12 | 6 | 6 | 8.72 | 0.180 | 0.59 | 0.75 | 0.95 | 1.23 | 1.70 | 2.20 | 3.56 | 4.30 |
MG-U74Av2 [o] | 12588 | 12 | 5 | 4 | 6.97 | 0.230 | 0.58 | 0.74 | 0.94 | 1.23 | 1.71 | 2.24 | 3.68 | 4.48 |
MG-U74Av2 [p] | 12588 | 12 | 7 | 21 | 9.50 | 0.125 | 0.59 | 0.75 | 0.95 | 1.24 | 1.72 | 2.21 | 3.54 | 4.30 |
MG-U74Av2 [q] | 12588 | 12 | 5 | 4 | 4.97 | 0.229 | 0.68 | 0.85 | 1.06 | 1.33 | 1.76 | 2.19 | 3.23 | 3.76 |
MG-U74Av2 [l4] | 12588 | 12 | 9 | 9 | 7.50 | 0.111 | 0.67 | 0.83 | 1.03 | 1.30 | 1.73 | 2.13 | 3.09 | 3.53 |
MG-U74Av2 [r] | 12588 | 12 | 10 | 20 | 4.69 | 0.269 | 0.65 | 0.82 | 1.02 | 1.29 | 1.73 | 2.17 | 3.31 | 3.89 |
MG-U74Av2 [r] | 12588 | 12 | 3 | 3 | 3.30 | 0.238 | 0.64 | 0.80 | 1.00 | 1.27 | 1.71 | 2.17 | 3.48 | 4.04 |
MG-U74Av2 [e5] | 12588 | 12 | 2 | 1 | 3.83 | 0.184 | 0.64 | 0.81 | 1.00 | 1.27 | 1.69 | 2.10 | 3.15 | 3.80 |
MG-U74Av2 [g2] | 12588 | 12 | 2 | 1 | 13.50 | 0.451 | 0.64 | 0.81 | 1.01 | 1.27 | 1.72 | 2.16 | 3.36 | 3.95 |
MG U74Av2 [n2] | 12400 | 12 | 26 | 13 | 6.56 | 0.113 | 0.64 | 0.80 | 1.00 | 1.27 | 1.70 | 2.12 | 3.15 | 3.67 |
MG-U74Av2 avg [sum] | Â | Â | [75] | [82] | 6.96 | 0.213 | 0.63 | 0.80 | 1.00 | 1.27 | 1.72 | 2.17 | 3.36 | 3.97 |
MG-U74Av2 SD | Â | Â | Â | Â | 3.07 | 0.101 | 0.03 | 0.04 | 0.04 | 0.03 | 0.02 | 0.04 | 0.20 | 0.31 |
MG-U74Av2 CV | Â | Â | Â | Â | 0.44 | 0.472 | 0.06 | 0.05 | 0.04 | 0.02 | 0.01 | 0.02 | 0.06 | 0.08 |
MG-U430A [l5] | 22636 | 25 | 10 | 5 | 7.68 | 0.132 | 0.65 | 0.81 | 1.01 | 1.27 | 1.68 | 2.06 | 2.94 | 3.36 |
MG-U430A [l6] | 22636 | 25 | 5 | 10 | 10.08 | 0.265 | 0.67 | 0.84 | 1.04 | 1.30 | 1.71 | 2.10 | 2.98 | 3.35 |
MG-U430A [l6] | 22636 | 25 | 5 | 10 | 9.44 | 0.160 | 0.65 | 0.81 | 1.01 | 1.27 | 1.67 | 2.05 | 2.93 | 3.30 |
MG-U430A | Â | Â | [20] | [25] | 9.07 | 0.186 | 0.65 | 0.82 | 1.02 | 1.28 | 1.69 | 2.07 | 2.95 | 3.34 |
MG-U430A | Â | Â | Â | Â | 1.24 | 0.070 | 0.01 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.03 | 0.03 |
MG-U430A | Â | Â | Â | Â | 0.14 | 0.377 | 0.02 | 0.02 | 0.02 | 0.02 | 0.01 | 0.01 | 0.01 | 0.01 |
RG-U34A [h2] | 8740 | 12 | 35 | 34 | 1.82 | 0.316 | 0.64 | 0.81 | 1.01 | 1.28 | 1.73 | 2.21 | 3.40 | 3.95 |
RG-U34A [l7] | 8740 | 12 | 6 | 3 | 3.25 | 0.226 | 0.68 | 0.85 | 1.06 | 1.33 | 1.76 | 2.17 | 3.20 | 3.77 |
RG-U34A, [l8] | 8740 | 12 | 4 | 2 | 6.01 | 0.146 | 0.65 | 0.83 | 1.03 | 1.29 | 1.72 | 2.11 | 3.10 | 3.60 |
RG-U34A avg [sum] | Â | Â | [45] | [39] | 3.70 | 0.229 | 0.66 | 0.83 | 1.03 | 1.30 | 1.74 | 2.16 | 3.24 | 3.78 |
RG-U34A SD | Â | Â | Â | Â | 2.13 | 0.085 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.05 | 0.15 | 0.17 |
RG-U34A CV | Â | Â | Â | Â | 0.58 | 0.371 | 0.03 | 0.03 | 0.02 | 0.02 | 0.01 | 0.02 | 0.05 | 0.05 |
RT-U34 Neurobiology [l7] | 982 | 12 | 40 | 20 | 1.77 | 0.194 | 0.60 | 0.75 | 0.96 | 1.22 | 1.65 | 2.08 | 3.12 | 3.38 |
Drosophila [s] | 13976 | 12 | 6 | 6 | 2.20 | 0.081 | 0.66 | 0.83 | 1.04 | 1.31 | 1.73 | 2.17 | 3.21 | 3.67 |
E. coli [t] | 7290 | 12 | 38 | 39 | 3.09 | 0.337 | 0.65 | 0.83 | 1.04 | 1.32 | 1.78 | 2.24 | 3.45 | 4.03 |
E. coli [u] | 7290 | 12 | 15 | 30 | 1.88 | 0.302 | 0.65 | 0.83 | 1.04 | 1.34 | 1.81 | 2.29 | 3.47 | 4.04 |
E. Coli avg [sum] | Â | Â | [53] | [69] | 2.23 | 0.228 | 0.64 | 0.81 | 1.02 | 1.30 | 1.74 | 2.19 | 3.31 | 3.78 |
ATH1 [v1] | 22700 | 25 | 14 | 17 | 9.22 | 0.307 | 0.68 | 0.85 | 1.05 | 1.31 | 1.71 | 2.09 | 2.95 | 3.31 |
ATH1 [v1] | 22700 | 25 | 34 | 36 | 11.18 | 0.269 | 0.68 | 0.85 | 1.05 | 1.31 | 1.71 | 2.08 | 2.91 | 3.26 |
ATH1 [w] | 22700 | 25 | 8 | 4 | 6.26 | 0.279 | 0.65 | 0.81 | 1.01 | 1.27 | 1.69 | 2.10 | 3.06 | 3.45 |
ATH1 [x] | 22700 | 25 | 4 | 2 | 3.09 | 0.232 | 0.68 | 0.85 | 1.05 | 1.31 | 1.72 | 2.12 | 3.17 | 3.70 |
ATH1 [y] | 22700 | 25 | 4 | 2 | 3.07 | 0.247 | 0.66 | 0.82 | 1.02 | 1.28 | 1.68 | 2.08 | 3.09 | 3.60 |
ATH1 avg [sum] | Â | Â | [64] | [61] | 6.57 | 0.267 | 0.67 | 0.84 | 1.04 | 1.30 | 1.70 | 2.09 | 3.03 | 3.46 |
ATH1 SD | Â | Â | Â | Â | 3.63 | 0.029 | 0.01 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.11 | 0.19 |
ATH1 CV | Â | Â | Â | Â | 0.55 | 0.108 | 0.02 | 0.02 | 0.02 | 0.02 | 0.01 | 0.01 | 0.03 | 0.05 |
Arabidopsis [v2] | 8200 | 12 | 7 | 8 | 7.69 | 0.403 | 0.75 | 0.94 | 1.14 | 1.40 | 1.79 | 2.15 | 2.89 | 3.18 |