Table 3 Differentially expressed genes selected by the consecutive sampling and coincidence method. List of the probe sets selected by the consecutive sampling and coincidence method using the interval 0.8. The fold change is calculated using the threshold of 10, substituting into the denominator function max(10, Y avg ), where Y avg is the mean of the under-expressed values. Bold print indicates the probe sets selected also for the interval 0.9. The probe set GI_4755127 printed in italics showed an inconsistent behavior in comparison of the probe 1 versus probe 2.
| Â | Â | Â | Â | Untreated | Treated | Fold Change | ||
|---|---|---|---|---|---|---|---|---|
| Â | Illumina probe set | Gene Name | Gene Function | Mean Intensity | CV | Mean Intensity | CV | Treated/Untr. mean |
Upregulated | GI_4504436 | HMOX1 | Oxidative Stress | 178.9 | 0.03 | 1060.1 | 0.07 | 5.92 |
| Â | GI_4505414 | NQO1 | Oxidative Stress | 13.3 | 0.09 | 56.7 | 0.06 | 4.27 |
| Â | GI_9790904 | GADD45 | Cell cycle/DNA Repair | 11.1 | 0.26 | 21.6 | 0.10 | 1.95 |
| Â | GI_4557514 | DDB2 | Cell cycle/DNA Repair | 24.7 | 0.07 | 41.8 | 0.06 | 1.69 |
| Â | GI_4507456 | TFRC | Oxidative Stress/Iron regulation | 130.7 | 0.15 | 217.1 | 0.01 | 1.66 |
| Â | GI_17978494 | P21 | Oxidative Stress/DNA Repair | 676.9 | 0.01 | 1069.7 | 0.02 | 1.58 |
| Â | GI_22035635 | MGST1 | Oxidative Stress | 72.4 | 0.04 | 107.1 | 0.09 | 1.48 |
| Â | GI_20127459 | XPC | DNA Repair | 42.5 | 0.07 | 59.8 | 0.04 | 1.41 |
| Â | GI_4502884 | CLK3 | Cell Cycle | 52.3 | 0.09 | 71.7 | 0.03 | 1.37 |
| Â | GI_5174726 | TCP1 | Molecular Chaperone | 109.5 | 0.09 | 147.6 | 0.05 | 1.35 |
| Â | GI_4755127 | ATF3 | Cell Cycle/DNA Repair | 4.3 | 0.09 | 13.2 | 0.21 | 1.32 |
Downregulated | GI_4826773 | G1P2 | Unknown | 220.3 | 0.07 | 143.1 | 0.07 | 1.54 |
| Â | GI_22538813 | CCL5 | Chemokine/Oxidative Stress | 147.9 | 0.02 | 104.1 | 0.08 | 1.42 |
| Â | GI_4506844 | CCL4 | Chemokine/inflammatory response | 98.7 | 0.04 | 71.4 | 0.11 | 1.38 |