Table 2 Probabilities of being true SS for first 40 statistically most highly ranked putative 5' SS. Probabilities are calculated based on number of times we spot certain nonamer acting as SS as opposed to splice-like signal in our learning set [see Subsection Splice Sites sensor]
From: Method of predicting Splice Sites based on signal interactions
Nonamer | Probability | Spotted as true signal | Spotted as true-like signal |
|---|---|---|---|
CCGGT AAGT | 0.701 | 270 | 115 |
CCGGT GAGT | 0.676 | 755 | 361 |
CGGGT AAGT | 0.668 | 270 | 134 |
ACGGT GAGT | 0.625 | 608 | 364 |
CGGGT GAGT | 0.587 | 586 | 412 |
GCGGT AAGT | 0.575 | 184 | 136 |
TCGGT AAGT | 0.568 | 218 | 166 |
CAGGT AAGC | 0.557 | 1326 | 1055 |
TCGGT GAGT | 0.556 | 503 | 401 |
ACGGT AAGT | 0.551 | 245 | 200 |
GCGGT GAGT | 0.530 | 569 | 504 |
CAGGT GAGT | 0.523 | 2561 | 2335 |
CAGGT AAGT | 0.509 | 1437 | 1388 |
AAGGT GAGT | 0.508 | 2013 | 1952 |
AAGGT AAGC | 0.504 | 1057 | 1039 |
CGCGT AAGT | 0.5 | 36 | 36 |
CCGGT AAGG | 0.489 | 157 | 164 |
CAGGT AAGG | 0.484 | 1667 | 1777 |
CGGGT AAGC | 0.482 | 145 | 156 |
AAGGT AAGT | 0.469 | 1389 | 1569 |
CAGGT AAGA | 0.469 | 1917 | 2172 |
ACGGT AAGG | 0.468 | 162 | 184 |
TCGGT AAGC | 0.457 | 101 | 120 |
CCGGT AAGC | 0.456 | 134 | 160 |
GAGGT AAGT | 0.454 | 978 | 1175 |
ACGGT ACGT | 0.453 | 29 | 35 |
AAGGT ACGT | 0.452 | 193 | 234 |
AAGGT ACGC | 0.423 | 85 | 116 |
GAGGT GAGT | 0.420 | 1717 | 2371 |
AAGGT AAGG | 0.418 | 1318 | 1833 |
AAGGT AAGA | 0.416 | 1610 | 2261 |
ACGGT AAGC | 0.408 | 118 | 171 |
GAGGT AAGC | 0.408 | 634 | 921 |
TCGGT AAGA | 0.408 | 148 | 215 |
CCGGT AAGA | 0.403 | 160 | 237 |
CGGGT AAGG | 0.397 | 219 | 332 |
ACGGT AAGA | 0.397 | 165 | 251 |
AAGGT GAGC | 0.395 | 1325 | 2031 |
CAGGT GAGC | 0.394 | 2073 | 3185 |
CAGGT ACGT | 0.392 | 231 | 358 |