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Table 2 Probabilities of being true SS for first 40 statistically most highly ranked putative 5' SS. Probabilities are calculated based on number of times we spot certain nonamer acting as SS as opposed to splice-like signal in our learning set [see Subsection Splice Sites sensor]

From: Method of predicting Splice Sites based on signal interactions

Nonamer Probability Spotted as true signal Spotted as true-like signal
CCGGT AAGT 0.701 270 115
CCGGT GAGT 0.676 755 361
CGGGT AAGT 0.668 270 134
ACGGT GAGT 0.625 608 364
CGGGT GAGT 0.587 586 412
GCGGT AAGT 0.575 184 136
TCGGT AAGT 0.568 218 166
CAGGT AAGC 0.557 1326 1055
TCGGT GAGT 0.556 503 401
ACGGT AAGT 0.551 245 200
GCGGT GAGT 0.530 569 504
CAGGT GAGT 0.523 2561 2335
CAGGT AAGT 0.509 1437 1388
AAGGT GAGT 0.508 2013 1952
AAGGT AAGC 0.504 1057 1039
CGCGT AAGT 0.5 36 36
CCGGT AAGG 0.489 157 164
CAGGT AAGG 0.484 1667 1777
CGGGT AAGC 0.482 145 156
AAGGT AAGT 0.469 1389 1569
CAGGT AAGA 0.469 1917 2172
ACGGT AAGG 0.468 162 184
TCGGT AAGC 0.457 101 120
CCGGT AAGC 0.456 134 160
GAGGT AAGT 0.454 978 1175
ACGGT ACGT 0.453 29 35
AAGGT ACGT 0.452 193 234
AAGGT ACGC 0.423 85 116
GAGGT GAGT 0.420 1717 2371
AAGGT AAGG 0.418 1318 1833
AAGGT AAGA 0.416 1610 2261
ACGGT AAGC 0.408 118 171
GAGGT AAGC 0.408 634 921
TCGGT AAGA 0.408 148 215
CCGGT AAGA 0.403 160 237
CGGGT AAGG 0.397 219 332
ACGGT AAGA 0.397 165 251
AAGGT GAGC 0.395 1325 2031
CAGGT GAGC 0.394 2073 3185
CAGGT ACGT 0.392 231 358