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Table 1 Nucleotide symbols used: M → (A/C), R → (A/G), W → (A/U), Y → (C/U), S → (C/G), K → (G/U). (Table credit [20])
From: Method of predicting Splice Sites based on signal interactions
| Protein | High-affinity binding site | Functional ESE |
|---|---|---|
| SRp20 | WCWWC | GCUCCUCUUCC |
| CUCKUCY | CCUCGUCC | |
| SC35 | AGSAGAGUA | GRYYMCYR |
| GWUWCCUGCUA | UGCYGYY | |
| GGGUAUGCUG | ||
| GAGCAGUAGKS | ||
| GUUCGAGUA | ||
| UGUUCSAGWU | ||
| AGGAGAU | ||
| 9G8 | (GAC)n | |
| ACGAGAGAY | ||
| WGGACRA | ||
| SF2/ASF | RGAAGAAC | CRSMSGW |
| AGGACRRAGC | ||
| SRp40 | UGGGAGCRGUYRGCUCGY | YRCRKM |
| SRp55 | YYWCWSG | |
| TRA2β | (GAA)n | |
| nhRNP Al | UAGGGW |
