From: In silico optimization of RNA–protein interactions for CRISPR-Cas13-based antimicrobials
RNA 3-D structure prediction program | RNA 2-D structure prediction program | Mean RMSD value (Å) | Standard deviation of RMSD values (Å) |
---|---|---|---|
RNAComposer | CentroidFold | 14.5751 | 3.4605 |
ContextFold | 15.0601 | 6.7700 | |
CONTRAfold | 13.0886 | 3.9715 | |
IPknot | 15.5927 | 4.3685 | |
MXfold2 | 13.3285 | 3.3359 | |
RNAfold | 13.8130 | 4.0411 | |
RNAshapes | 13.4816 | 4.3896 | |
RNAstructure | 13.5431 | 4.2974 | |
Rosetta | CentroidFold | 11.4316 | 3.9693 |
ContextFold | 13.2483 | 4.9258 | |
CONTRAfold | 11.8012 | 4.3517 | |
IPknot | 9.9731 | 3.4309 | |
MXfold2 | 11.1416 | 3.8934 | |
RNAfold | 11.9661 | 4.6712 | |
RNAshapes | 11.8083 | 3.5449 | |
RNAstructure | 12.8113 | 5.3425 |