csCOG | Genome number | Proteins number | Varia-bility | COG (arCOG)* | Pfam (DUF) | Comment |
---|---|---|---|---|---|---|
sulfo9.02117 | 52 | 52 | 0.25 | COG1698 (arCOG04308) | Â | Essential [42]; PDB: 2QZG, linked to Zn-finger protein |
sulfo9.02278 | 52 | 52 | 0.26 | (arCOG08212) | Â | Â |
sulfo9.01977 | 52 | 52 | 0.29 | (arCOG05886) | Â | Essential [42] |
sulfo9.00722 | 52 | 52 | 0.57 | COG1888 (arCOG04140) | Â | PDB: 3BPD; ferredoxin fold |
sulfo9.01763 | 52 | 52 | 0.61 | COG4755 (arCOG04123) | DUF2153 | Linked to Trm112 RNA methyltransferase activating protein |
halo9.02555 | 37 | 40 | 0.36 | COG1885 (arCOG02119) | DUF555 | Single CxxC, weak similarity to CREN7 |
halo9.01859 | 37 | 37 | 0.38 | (arCOG04616) | DUF5800 | Â |
halo9.01783 | 37 | 37 | 0.39 | (arCOG04777) | Â | Â |
halo9.02264 | 36 | 36 | 0.28 | (arCOG04587) | Â | Linked to glutaredoxin family protein |
halo9.02689 | 32 | 32 | 0.23 | (arCOG03655) | Â | Linked to Anion-transporting ATPase ArsA |
halo9.02039 | 37 | 37 | 0.49 | COG2412 (arCOG04051) | DUF424 | PDB: 2QYA; linked to TPR repeats containing protein |
thermo9.00526 | 40 | 40 | 0.46 | (arCOG04849) | Â | Linked to Ribosome biogenesis GTPase A |
thermo9.01167 | 41 | 41 | 0.3 | COG2412 (arCOG04051) | DUF424 | linked to NMD protein affecting ribosome stability and mRNA decay |
thermo9.01884 | 41 | 41 | 0.32 | (arCOG05846) | Â | Linked to Transcription initiation factor IIE, alpha subunit |
thermo9.01623 | 41 | 41 | 0.36 | COG1885 (arCOG02119) | DUF555 | Linked to Uncharacterized protein, DUF357 family |
thermo9.02768 | 42 | 43 | 0.2 | COG1888 (arCOG04140) | Â | Linked to ArsR transcriptional regulators; PDB: 2X3D [69] |
thermo9.01533 | 42 | 42 | 0.31 | COG1531 (arCOG01302) | Â | Linked to MBL-fold metallohydrolase superfamily; predicted RNA cyclic group end recognition domain [70] |
thermo9.01369 | 42 | 42 | 0.42 | (arCOG05869) | Â | PDB: 2K4N; linked 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI; |
methano7.000565 | 41 | 48 | 0.48 | COG4744 (arCOG03208) | DUF2149 | Membrane protein; linked to biopolymer transport protein TolQ |
methano7.001417 | 41 | 41 | 0.48 | COG3377 (arCOG04424) | DUF1805 | PDB: 1QW2; linked to tRNA G10 N-methylase Trm11 |
methano7.001273 | 41 | 41 | 0.45 | COG4050 (arCOG04903) | DUF2112 | In a conserved context with uncharacterized protein, DUF2102 family and others; single CxxC motif; methanogenesis maker 5 |
methano7.001697 | 41 | 41 | 0.4 | (arCOG04388) | Â | Linked to Uncharacterized protein, DUF2551 family |
methano7.001273 | 41 | 41 | 0.45 | COG4050 (arCOG04903) | DUF2102 | Methanogenesis maker 6; linked to DUF2112 |
flavo9.00782 | 50 | 50 | 0.47 | – | DUF4286 | Linked to outer membrane protein assembly factor BamD |
flavo9.01459 | 50 | 50 | 0.45 | – |  | Linked to RuvX, Holliday junction resolvase; SRPBCC domain, Hsp90 cochaperone in yeast [71, 72]; putative hydrophobic ligand binding site |
flavo9.00789 | 50 | 50 | 0.45 | – | DUF2797 | Linked to GH3 auxin-responsive promoter; contains Zn ribbon |
flavo9.01638 | 50 | 50 | 0.30 | – |  | SRPBCC domain, also see flavo9.01459 |
flavo9.02618 | 50 | 50 | 0.30 | – | DUF4254 | Linked to ADP-heptose:LPS heptosyltransferase, RfaF |
deino9.00587 | 33 | 33 | 0.34 | – |  | Annotated as quinate 5-dehydrogenase; present in Thermus and other bacteria |
deino9.01277 | 33 | 33 | 0.35 | – | DUF4385 | Linked to DNA-binding ferritin-like protein Dps; present in Thermus |
deino9.00288 | 33 | 33 | 0.45 | – |  | Linked to uncharacterized membrane protein, Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat; secreted; present in Thermus |
deino9.01656 | 33 | 33 | 0.49 | – |  |  |
deino9.02309 | 32 | 32 | 0.33 | – | DUF1844 | Linked to D-Tyr-tRNA(Tyr) deacylase |
paen9.03935 | 66 | 66 | 0.22 | COG4472 | DUF965 | Linked to Alanyl-tRNA synthetase, AlaS; homolog of IreB, acting a negative regulator of cephalosporin resistance [73] |
paen9.05835 | 66 | 66 | 0.34 | – |  | Next uncharacterized protein YrrD, contains PRC-barrel domain and Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme; Zn ribbon domain |
paen9.02641 | 66 | 66 | 0.37 | – |  | YokU-like protein, putative antitoxin RelE fold family |
paen9.02767 | 66 | 66 | 0.39 | – |  | Linked to uncharacterized membrane protein SpoIIM, required for sporulation |
paen9.02361 | 66 | 66 | 0.4 | – | DUF1499 |  |
rhodo7.006964 | 53 | 53 | 0.07 | – | DUF2469 | Often found in Actinomycetes clustered with signal peptidase and/or RNAse HII |
rhodo7.004823 | 53 | 53 | 0.14 | – | DUF3039 | Possibly metal-binding; Hx(20)C…CxxC motif |
rhodo7.005227 | 53 | 54 | 0.159 | – | DUF3151 | Linked to Uncharacterized membrane protein YgaE, UPF0421/DUF939 family |
rhodo7.003034 | 53 | 53 | 0.253 | – | DUF4191 | 2TM domain, in operon with Lipoate synthase LipA |
rhodo7.002008 | 53 | 53 | 0.615 | – | DUF3090 | Contain CxxC..HxC motif, putative metal-binding protein |