Table 1 Proteins of anaerobic metabolism in cultivated and uncultivated α proteobacteria
From: Alpha proteobacterial ancestry of the [Fe-Fe]-hydrogenases in anaerobic eukaryotes
Accession number of indicated proteins | |||||||||
|---|---|---|---|---|---|---|---|---|---|
Taxonomic group | Clostridiales | α proteobacteria | Eukaryotes | ||||||
Genome | full genome | full genome | full genome | full genome | metagenome | metagenome | metagenome assembly, refined | full genome | full genome |
Organism | Eubacterium acidaminophilum | Pleomorphomonas oryzae | Phaeospirillum molischianum | Pararhodospirillum photometricum | Azospirillum CAG:260 | Azospirillum CAG:239 | Acetobacter MGS:igc0867 a , formerly CAG:977 | Entamoeba invadens | Trichomonas vaginalis |
Protein | |||||||||
Fdsγ/NuoE-like | CAC39229, HymA | WP_051228661 | CCG42368, HoxS | WP_041793924, HoxS | ? | CDB53275 | MH0030_GL0011535, CCZ22624 | absent | AAV65813 |
Fdsβ/NuoF-like | CAC39230, HymB | WP_026791755 | ? | CDB53276 | MH0276_GL0125578,CCZ22625 | absent | AAV65812 | ||
Fdsα/NuoG-like, type M3 [FeFe]-hydrogenase | CAC39231, HymC | WP_026791754, WP_036838588 | CCG42367, CCG40656 | WP_051013609 | ? | CDB53277 | MH0030_GL0047537, CCZ22626 | M2 derivatives | M2 & M3 derivatives |
type A [FeFe]-hydrogenase | AHM56319 | absent | absent | absent | CDB39301 | CDB53824 | MH0143_GL0097789, CCZ21919 | Yes, 5 | absent |
HydE maturase | WP_025434761 | WP_051228492 | WP_002729849 | WP_041796462 | CDB39229 | CDB54134 | MH0030_GL0015854, CCZ22110 | absent | Yes, ≥ 2 |
HydF maturase | WP_025434763 | WP_026790854 | WP_002729850 | WP_041793928 | CDB40806 | CDB53483 | MH0030_GL0007678, CCZ21461 | absent | Yes, ≥ 2 |
HydG maturase | WP_025434762 | WP_026790852 | WP_002729851 | WP_041793926 | CDB40807 | CDB54364 | MH0030_GL0045387, CCZ22171 | absent | Yes, ≥ 2 |
PFO reductase | AHM55439 | WP_036840581 | CCG40004 | CCG09362 | CDB40895 | ? | MH0143_GL0088070, CCZ21865 | Yes, ≥ 5 | Yes, ≥ 1 |
Short ferredoxin | WP_025436274 | WP_026790610. | CCG39997 | CCG06940 | CDB40908 | CDB53367 | MH0030_GL0000056, CCZ22365 | Yes, ≥ 2 | Yes, ≥ 3 |