From: Divergent evolution and purifying selection of the flaA gene sequences in Aeromonas
np | ℓ | Site class | Proportion | Background | Foreground | Selected sites under positive selectionc | |
---|---|---|---|---|---|---|---|
Model Aa | 4 | -6631.240 | 0 | 0.779 | 0.027 | 0.027 | 87G 105S 107K |
1 | 0.065 | 1 | 1 | 110E 116V 120G | |||
2a | 0.144 | 0.027 | 39.95 | 135T 141S 153N | |||
2b | 0.012 | 1 | 39.95 | 157G 162Q 174K | |||
Model A with ω = 1b | 3 | -6638.340 | 0 | 0.712 | 0.026 | 0.026 | 176T 185G 191Q |
1 | 0.060 | 1 | 1 | 200A 205L | |||
2a | 0.210 | 0.026 | 1 | Not allowed | |||
2b | 0.018 | 1 | 1 |