Table 5 Time to compute alignments for the full set of human mRNA sequences. The timing is based on a single instance running on Intel Xeon 2.33 GHz/8 GB Linux box.
From: Splign: algorithms for computing spliced alignments with identification of paralogs
| Â | Sim4 | Spidey | BLAT | GMAP | SPA | Splign |
|---|---|---|---|---|---|---|
CPU hours | 856 | 698 | 8 | 12 | 2448 | 49 |