Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data

Biology Direct

Table 2 Summary of syntenic fragment analysis of 7 marine microbial species and E. coli.

Species	CDS	Homologous fragments	Homologous fragments with synteny	Syntenic fragments	% unique to group
'Candidatus Pelagibacter ubique'	1,332	349,742	99,457	71,696	98.8
Prochlorococcus marinus (MED4)	1,713	226,594	21,304	8,398	99.9
Croceibacter atlanticus	2,633	256,645	15,089	1,258	99.0
Oceanicola batsensis	4,614	354,793	49,278	532	60.5
Oceanicaulis alexandrii	3,365	330,225	36,845	500	31.0
Escherichia coli	4,289	306,293	33,306	406	92.9
Parvularcula bermudensis	2,824	310,044	30,809	239	31.8
Janibacter sp.	4,367	240,360	18,570	23	91.3

Note that "syntenic fragments" are "homologous fragments with synteny" that pass the best hit test. The percent of syntenic fragments which are unique to the query genome, for this set of queries, is shown in the final column.

ISSN: 1745-6150